Simon Tavaré publications

ZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium
Holland DG;Burleigh A;Git A;Goldgraben MA;Perez-Mancera PA;Chin SF;Hurtado A;Bruna A;Ali HR;Greenwood W;Dunning MJ;Samarajiwa S;Menon S;Rueda OM;Lynch AG;McKinney S;Ellis IO;Eaves CJ;Carroll JS;Curtis C;Aparicio S;Caldas C
EMBO Mol Med 2011; 3 (3 ):167-180.
DOI: 10.1002/emmm.201100122.

Sequential DNA methylation changes are associated with DNMT3B overexpression in colorectal neoplastic progression
Ibrahim AEK;Arends MJ;Silva AL;Wyllie AH;Greger L;Ito Y;Vowler SL;Huang THM;Tavare S;Murrell A;Brenton JD
Gut 2011; 60 (4 ):499-508.
PubMed;  DOI: 10.1136/gut.2010.223602.

BayesPeak-an R package for analysing ChIP-seq data
Cairns J;Spyrou C;Stark R;Smith ML;Lynch AG;Tavare S
Bioinformatics 2011; 27 (5 ):713-714.
UKPubMed (open access);  PubMed;  DOI: 10.1093/bioinformatics/btq685.

Systems biology of interferon responses
Hertzog PJ;Forster S;Samarajiwa S
J Interferon Cytokine Res 2011; 31 ():5-11.

BeadDataPackR: A Tool to Facilitate the Sharing of Raw Data from Illumina BeadArray Studies.
Smith ML;Lynch AG
Cancer Inform 2010; 9 ():217-227.
UKPubMed (open access);  PubMed; 

CNAseg-a novel framework for identification of copy number changes in cancer from second-generation sequencing data
Ivakhno S;Royce T;Cox AJ;Evers DJ;Cheetham RK;Tavare S
Bioinformatics 2010; 26 (24):3051-3058.
PubMed;  DOI: 10.1093/bioinformatics/btq587.

The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment
Lynch AG;Hadfield J;Dunning MJ;Osborne M;Thorne NP;Tavare S
BMC Genomics 2010; 11 ():540.
PubMed;  DOI: 10.1186/1471-2164-11-540.

The importance of platform annotation in interpreting microarray data
Dunning MJ;Curtis C;Barbosa-Morais NL;Caldas C;Tavare S;Lynch AG
Lancet Oncol 2010; 11 (8):717-717.

SIK2 Is a Centrosome Kinase Required for Bipolar Mitotic Spindle Formation that Provides a Potential Target for Therapy in Ovarian Cancer
Ahmed AA;Lu Z;Jennings NB;Etemadmoghadam D;Capalbo L;Jacamo RO;Barbosa-Morais N;Le XF;Vivas-Mejia P;Lopez-Berestein G;Grandjean G;Bartholomeusz G;Liao W;Andreeff M;Bowtell D;Glover DM;Sood AK;Bast RC;Australian Ovarian Canc Study Grp
Cancer Cell 2010; 18 (2):109-121.
PubMed;  DOI: 10.1016/j.ccr.2010.06.018.

Data analysis issues for allele-specific expression using Illumina's GoldenGate assay
Ritchie ME;Forrest MS;Dimas AS;Daelemans C;Dermitzakis ET;Deloukas P;Tavare S
BMC Bioinformatics 2010; 11 ():280.
DOI: 10.1186/1471-2105-11-280.

The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans
Clark AM;Goldstein LD;Tevlin M;Tavare S;Shaham S;Miska EA
Nucleic Acids Res 2010; 38 (11):3780-3793.
UKPubMed (open access);  PubMed;  DOI: 10.1093/nar/gkq083.

Does the Use of a Handheld Fan Improve Chronic Dyspnea? A Randomized, Controlled, Crossover Trial
Galbraith S;Fagan P;Perkins P;Lynch A;Booth S
J Pain Symptom Manage 2010; 39 (5):831-838.
PubMed;  DOI: 10.1016/j.jpainsymman.2009.09.024.

Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data
Smith ML;Dunning MJ;Tavare S;Lynch AG
BMC Bioinformatics 2010; 11 ():208.
UKPubMed (open access);  PubMed;  DOI: 10.1186/1471-2105-11-208.

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta
Daelemans C;Ritchie ME;Smits G;Abu-Amero S;Sudbery IM;Forrest MS;Campino S;Clark TG;Stanier P;Kwiatkowski D;Deloukas P;Dermitzakis ET;Tavare S;Moore GE;Dunham I
BMC Genet 2010; 11 ():25.
DOI: 10.1186/1471-2156-11-25.

CNAnova: a new approach for finding recurrent copy number abnormalities in cancer SNP microarray data
Ivakhno S;Tavare S
Bioinformatics 2010; 26 (11):1395-1402.
PubMed;  DOI: 10.1093/bioinformatics/btq145.

Driver mutations in TP53 are ubiquitous in high grade serous carcinoma of the ovary
Ahmed AA;Etemadmoghadam D;Temple J;Lynch AG;Riad M;Sharma R;Stewart C;Fereday S;Caldas C;DeFazio A;Bowtell D;Brenton JD;Australian Ovarian Canc Study Grp
J Pathol 2010; 221 (1):49-56.
PubMed;  DOI: 10.1002/path.2696.

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data
Barbosa-Morais NL;Dunning MJ;Samarajiwa SA;Darot JFJ;Ritchie ME;Lynch AG;Tavare S
Nucleic Acids Res 2010; 38 (3):e17.
UKPubMed (open access);  PubMed;  DOI: 10.1093/nar/gkp942.

Symptom classification in irritable bowel syndrome as a guide to treatment.
Wiesner M;Naylor SJ;Copping A;Furlong A;Lynch AG;Parkes M;Hunter JO
Scand J Gastroenterol 2009; 44 (7):796-803.
PubMed;  DOI: 10.1080/00365520902964705.

Swift: primary data analysis for the Illumina Solexa sequencing platform.
Whiteford N;Skelly T;Curtis C;Ritchie ME;Lohr A;Zaranek AW;Abnizova I;Brown C
Bioinformatics 2009; 25 (17):2194-2199.
UKPubMed (open access);  PubMed;  DOI: 10.1093/bioinformatics/btp383.

The pitfalls of platform comparison: DNA copy number array technologies assessed
Curtis C;Lynch AG;Dunning MJ;Spiteri I;Marioni JC;Hadfield J;Chin SF;Brenton JD;Tavare S;Caldas C
BMC Genomics 2009; 10 ():588.
UKPubMed (open access);  PubMed;  DOI: 10.1186/1471-2164-10-588.

Characterisation of microRNA expression in post-natal mouse mammary gland development
Avril-Sassen S;Goldstein LD;Stingl J;Blenkiron C;Le Quesne J;Spiteri I;Karagavriilidou K;Watson CJ;Tavare S;Miska EA;Caldas C
BMC Genomics 2009; 10 ():548.
UKPubMed (open access);  PubMed;  DOI: 10.1186/1471-2164-10-548.

Genome-wide analysis of a G-quadruplex-specific single-chain antibody that regulates gene expression
Fernando H;Sewitz S;Darot J;Tavare S;Huppert JL;Balasubramanian S
Nucleic Acids Res 2009; 37 (20):6716-6722.
UKPubMed (open access);  PubMed;  DOI: 10.1093/nar/gkp740.

BayesPeak: Bayesian analysis of ChIP-seq data
Spyrou C;Stark R;Lynch AG;Tavare S
BMC Bioinformatics 2009; 10 ():299.
UKPubMed (open access);  PubMed;  DOI: 10.1186/1471-2105-10-299.

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
Ritchie ME;Carvalho BS;Hetrick KN;Tavare S;Irizarry RA
Bioinformatics 2009; 25 (19):2621-2623.
UKPubMed (open access);  PubMed;  DOI: 10.1093/bioinformatics/btp470.

Product Length, Dye Choice, and Detection Chemistry in the Bead-Emulsion Amplification of Millions of Single DNA Molecules in Parallel
Tiemann-Boege I;Curtis C;Shinde DN;Goodman DB;Tavare S;Arnheim N
Anal Chem 2009; 81 (14):5770-5776.
UKPubMed (open access);  PubMed;  DOI: 10.1021/ac900633y.

Isolation of Stool-Derived Mucus Provides a High Yield of Colonocytes Suitable for Early Detection of Colorectal Carcinoma
White V;Scarpini C;Barbosa-Morais NL;Ikelle E;Carter S;Laskey RA;Miller R;Coleman N
Cancer Epidemiol Biomarkers Prev 2009; 18 (7):2006-2013.
PubMed;  DOI: 10.1158/1055-9965.EPI-08-1145.

Many colorectal cancers are 'flat' clonal expansions
Siegmund KD;Marjoram P;Tavare S;Shibata D
Cell Cycle 2009; 8 (14):2187-2193.

Generation and validation of a revised classification for oesophageal and junctional adenocarcinoma.
Peters CJ;Hardwick RH;Vowler SL;Fitzgerald RC;Oesophageal Cancer Clinical and Molecular Stratification Study Group
Br J Surg 2009; 96 (7):724-733.
PubMed;  DOI: 10.1002/bjs.6584.

Autophagy mediates the mitotic senescence transition
Young ARJ;Narita M;Ferreira M;Kirschner K;Sadaie M;Darot JFJ;Tavare S;Arakawa S;Shimizu S;Watt FM;Narita M
Genes Dev 2009; 23 (7):798-803.
UKPubMed (open access);  PubMed;  DOI: 10.1101/gad.519709.

Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers
Siegmund KD;Marjoram P;Woo YJ;Tavare S;Shibata D
Proc Natl Acad Sci U S A 2009; 106 (12):4828-4833.
UKPubMed (open access);  PubMed;  DOI: 10.1073/pnas.0810276106.

Association of ESR1 gene tagging SNPs with breast cancer risk
Dunning AM;Healey CS;Baynes C;Maia AT;Scollen S;Vega A;Rodriguez R;Barbosa-Morais NL;Ponder BAJ;Low YL;Bingham S;Haiman CA;Le Marchand L;Broeks A;Schmidt MK;Hopper J;Southey M;Beckmann MW;Fasching PA;Peto J;Johnson N;Bojesen SE;Nordestgaard B;Milne RL;Benitez J;Hamann U;Ko Y;Schmutzler RK;Burwinkel B;Schurmann P;Dork T;Heikkinen T;Nevanlinna H;Lindblom A;Margolin S;Mannermaa A;Kosma VM;Chen XQ;Spurdle A;Change-Claude J;Flesch-Janys D;Couch FJ;Olson JE;Severi G;Baglietto L;Brresen-Dale AL;Kristensen V;Hunter DJ;Hankinson SE;Devilee P;Vreeswijk M;Lissowska J;Brinton L;Liu JJ;Hall P;Kang D;Yoo KY;Shen CY;Yu JC;Anton-Culver H;Ziogoas A;Sigurdson A;Struewing J;Easton DF;Garcia-Closas M;Humphreys MK;Morrison J;Pharoah PDP;Pooley KA;Chenevix-Trench G;SEARCH;EPIC;MEC;ABCS;ABCFS;BBCC;BBCS;CGPS;CNIO-BCS;GENICA;GC-HBOC;HABCS;HEBCS;KARBAC;KBCS;kConFab;AOCS Management Grp;MARIE;MCBCS;MCCS;NBCS;NHS;ORIGO;PBCS;SASBAC;SEBCS;TWBCS;UCIBCS;USRTS;BCAC
Hum Mol Genet 2009; 18 (6):1131-1139.
UKPubMed (open access);  PubMed;  DOI: 10.1093/hmg/ddn429.

Older individuals appear to acquire mitotically older colorectal cancers
Woo YJ;Siegmund KD;Tavare S;Shibata D
J Pathol 2009; 217 (4):483-488.
PubMed;  DOI: 10.1002/path.2506.

Population Genetic Inference From Resequencing Data
Jiang R;Tavare S;Marjoram P
Genetics 2009; 181 (1):187-197.

Myocardial gene expression associated with genetic cardiac hypertrophy in the absence of hypertension
Dwyer JP;Ritchie ME;Smyth GK;Harrap SB;Delbridge LMD;Domenighetti AA;Di Nicolantonio R
Hypertens Res 2008; 31 (5):941-955.

Spike-in validation of an Illumina-specific variance-stabilizing transformation
Dunning MJ;Ritchie ME;Barbosa-Morais NL;Tavare S;Lynch AG
BMC Res Notes 2008; 1 ():1-18.
PubMed; 

Serum albumin level as a predictor of outcome in traumatic brain injury: Potential for treatment
Bernard F;Al-Tamimi YZ;Chafield D;Lynch AG;Matta BF;Menon DK
J Trauma 2008; 64 (4):872-875.

Suprarenal endograft fixation and medium-term renal function: Systematic review and meta-analysis
Walsh SR;Boyle JR;Lynch AG;Sadat U;Carpenter JP;Tang TY;Gaunt ME
J Vasc Surg 2008; 47 (6):1364-1370.
PubMed;  DOI: 10.1016/j.jvs.2007.11.029.

Integrative analysis of RUNX1 downstream pathways and target genes
Michaud J;Simpson KM;Escher R;Buchet-Poyau K;Beissbarth T;Carmichael C;Ritchie ME;Schutz F;Cannon P;Liu M;Shen X;Ito Y;Raskind WH;Horwitz MS;Osato M;Turner DR;Speed TP;Kavallaris M;Smyth GK;Scott HS
BMC Genomics 2008; 9 ():363.

Functional and metabolic remodelling in GLUT4-deficient hearts confers hyper-responsiveness to substrate intervention
Huggins CE;Domenighetti AA;Ritchie ME;Khalil N;Favaloro JM;Proletto J;Smyth GK;Pepe S;Delbridge LMD
J Mol Cell Cardiol 2008; 44 (2):270-280.

Tissue-specific splicing factor gene expression signatures
Grosso AR;Gomes AQ;Barbosa-Morais NL;Caldeira S;Thorne NP;Grech G;von Lindern M;Carmo-Fonseca M
Nucleic Acids Res 2008; 36 (15):4823-4832.

Assessing agreement between multiple raters with missing rating information, applied to breast cancer tumour grading.
Fanshawe TR;Lynch AG;Ellis IO;Green AR;Hanka R
PLoS ONE 2008; 3 ():e2925.
UKPubMed (open access);  PubMed;  DOI: 10.1371/journal.pone.0002925.

BASH: a tool for managing BeadArray spatial artefacts
Cairns JM;Dunning MJ;Ritchie ME;Russell R;Lynch AG
Bioinformatics 2008; 24 (24):2921-2922.
UKPubMed (open access);  PubMed;  DOI: 10.1093/bioinformatics/btn557.

Modifier Effects between Regulatory and Protein-Coding Variation
Dimas AS;Stranger BE;Beazley C;Finn RD;Ingle CE;Forrest MS;Ritchie ME;Deloukas P;Tavare S;Dermitzakis ET
PLoS Genet 2008; 4 (10):e1000244.

AURKA overexpression accompanies dysregulation of DNA-damage response genes in invasive urothelial cell carcinoma
Veerakumarasivam A;Goldstein LD;Saeb-Parsy K;Scott HE;Warren A;Thorne NP;Mills IG;Venkitaraman A;Neal DE;Kelly JD
Cell Cycle 2008; 7 (22):3525-3533.

Species-specific transcription in mice carrying human chromosome 21
Wilson MD;Barbosa-Morais NL;Schmidt D;Conboy CM;Vanes L;Tybulewicz VLJ;Fisher EMC;Tavare S;Odom DT
Science 2008; 322 (5900):434-438.

An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
Rakyan VK;Down TA;Thorne NP;Flicek P;Kulesha E;Graf S;Tomazou EM;Backdahl L;Johnson N;Herberth M;Howe KL;Jackson DK;Miretti MM;Fiegler H;Marioni JC;Birney E;Hubbard TJP;Carter NP;Tavare S;Beck S
Genome Res 2008; 18 (9):1518-1529.
UKPubMed (open access);  PubMed;  DOI: 10.1101/gr.077479.108.

Hidden copy number variation in the HapMap population
Marioni JC;White M;Tavare S;Lynch AG
Proc Natl Acad Sci U S A 2008; 105 (29):10067-10072.

PMC42, a breast progenitor cancer cell line, has normal-like mRNA and microRNA transcriptomes
Git A;Spiteri I;Blenkiron C;Dunning MJ;Pole JCM;Chin SF;Wang YZ;Smith J;Livesey FJ;Caldas C
Breast Cancer Res 2008; 10 (3):R54.
UKPubMed (open access);  PubMed;  DOI: 10.1186/bcr2109.

Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline
Das PP;Bagijn MP;Goldstein LD;Woolford JR;Lehrbach NJ;Sapetschnig A;Buhecha HR;Gilchrist MJ;Howe KL;Stark R;Matthewss N;Berezilkov E;Ketting RF;Tavare S;Miska EA
Mol Cell 2008; 31 (1):79-90.
PubMed;  DOI: 10.1016/j.molcel.2008.06.003.

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
Down TA;Rakyan VK;Turner DJ;Flicek P;Li H;Kulesha E;Graf S;Johnson N;Herrero J;Tomazou EM;Thorne NP;Backdahl L;Herberth M;Howe KL;Jackson DK;Miretti MM;Marioni JC;Birney E;Hubbard TJP;Durbin R;Tavare S;Beck S
Nat Biotechnol 2008; 26 (7):779-785.
UKPubMed (open access);  PubMed;  DOI: 10.1038/nbt1414.

Pediatric malignant germ cell tumors show characteristic transcriptome profiles
Palmer RD;Barbosa-Morais NL;Gooding EL;Muralidhar B;Thornton CM;Pett MR;Roberts I;Schneider DT;Thorne N;Tavare S;Nicholson JC;Coleman N;Children's Canc & Leukaemia Grp
Cancer Res 2008; 68 (11):4239-4247.
PubMed;  DOI: 10.1158/0008-5472.CAN-07-5560.

Inferring relative numbers of human leucocyte genome replications
Chu M;Siegmund KD;Hao QL;Crooks GM;Tavare S;Shibata D
Br J Haematol 2008; 141 (6):862-871.
PubMed;  DOI: 10.1111/j.1365-2141.2008.07142.x.

Statistical issues in the analysis of Illumina data
Dunning MJ;Barbosa-Morais NL;Lynch AG;Tavare S;Ritchie ME
BMC Bioinformatics 2008; 9 ():85.

Association of single-nucleotide polymorphisms in the cell cycle genes with breast cancer in the British population
Driver KE;Song H;Lesueur F;Ahmed S;Barbosa-Morais NL;Tyrer JP;Ponder BAJ;Easton DF;Pharoah PDP;Dunning AM;SEARCH Team
Carcinogenesis 2008; 29 (2):333-341.
UKPubMed (open access);  PubMed;  DOI: 10.1093/carcin/bgm284.

Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor.
Conboy CM;Spyrou C;Thorne NP;Wade EJ;Barbosa-Morais NL;Wilson MD;Bhattacharjee A;Young RA;Tavare S;Lees JA;Odom DT
PLoS ONE 2007; 2 (10):e1061.

Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization
Marioni JC;Thorne NP;Valsesia A;Fitzgerald T;Redon R;Fiegler H;Andrews TD;Stranger BE;Lynch AG;Dermitzakis ET;Carter NP;Tavare S;Hurles ME
Genome Biol 2007; 8 (10):R228.

High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer
Chin SF;Teschendorff AE;Marioni JC;Wang Y;Barbosa-Morais NL;Thorne NP;Costa JL;Pinder SE;De Wiel MAV;Green AR;Ellis IO;Porter PL;Tavare S;Brenton JD;Ylstra B;Caldas C
Genome Biol 2007; 8 (10):R215.

MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype
Blenkiron C;Goldstein LD;Thorne NP;Spiteri I;Chin SF;Dunning MJ;Barbosa-Morais NL;Teschendorff AE;Green AR;Ellis IO;Tavare S;Caldas C;Miska EA
Genome Biol 2007; 8 (10):R214.

High grade glioma: Imaging combined with pathological grade defines management and predicts prognosis
Burnet NG;Lynch AG;Jefferies SJ;Price SJ;Jones PH;Antoun NM;Xuereb JH;Pohl U
Radiother Oncol 2007; 85 (3):371-378.

Early radiotherapy dose response and lack of hypersensitivity effect in normal brain tissue: a sequential dynamic susceptibility imaging study of cerebral perfusion
Price SJ;Jena R;Green HAL;Kirkby NF;Lynch AG;Coles CE;Pickard JD;Giltard JH;Burnet NG
Clin Oncol (R Coll Radiol) 2007; 19 (8):577-587.

New androgen receptor genomic targets show an interaction with the ETS1 transcription factor
Massie CE;Adryan B;Barbosa-Morais NL;Lynch AG;Tran MG;Neal DE;Mills IG
EMBO Rep 2007; 8 (9):871-878.

Population genomics of human gene expression
Stranger BE;Nica AC;Forrest MS;Dimas A;Bird CP;Beazley C;Ingle CE;Dunning M;Flicek P;Koller D;Montgomery S;Tavare S;Deloukas P;Dermitzakis ET
Nat Genet 2007; 39 (10):1217-1224.

beadarray: R classes and methods for Illumina bead-based data
Dunning MJ;Smith ML;Ritchie ME;Tavare S
Bioinformatics 2007; 23 (16):2183-2184.

Global microRNA profiles in cervical squamous cell carcinoma depend on Drosha expression levels
Muralidhar B;Goldstein LD;Ng G;Winder DM;Palmer RD;Gooding EL;Barbosa-Morais NL;Mukherjee G;Thorne NP;Roberts I;Pett MR;Coleman N
J Pathol 2007; 212 (4):368-377.

Lack of increases in methylation at three CpG-rich genomic loci in non-mitotic adult tissues during aging
Chu MW;Siegmund KD;Eckstam CL;Kim JY;Yang AS;Kanel GC;Tavare S;Shibata D
BMC Med Genet 2007; 8 ():50.

Stem cell chronicles: Autobiographies within Genomes
Shibata D;Tavare S
Stem Cell Rev 2007; 3 (1):94-103.

Numbers of copy-number variations and false-negative rates will be underestimated if we do not account for the dependence between repeated experiments
Lynch AG;Marioni JC;Tavare S
Am J Hum Genet 2007; 81 (2):418-420.

The stem cell population of the human colon crypt: Analysis via methylation patterns
Nicolas P;Kim KM;Shibata D;Tavare S
PLoS Comput Biol 2007; 3 (3):364-374.

Using array-comparative genomic hybridization to define molecular portraits of primary breast cancers
Chin SF;Wang Y;Thorne NP;Teschendorff AE;Pinder SE;Vias M;Naderi A;Roberts I;Barbosa-Morais NL;Garcia MJ;Iyer NG;Kranjac T;Robertson JFR;Aparicio S;Tavare S;Ellis I;Brenton JD;Caldas C
Oncogene 2007; 26 (13):1959-1970.

A gene-expression signature to predict survival in breast cancer across independent data sets
Naderi A;Teschendorff AE;Barbosa-Morais NI;Pinder SE;Green AR;Powe DG;Robertson JFR;Aparicio S;Ellis IO;Brenton JD;Caldas C
Oncogene 2007; 26 (10):1507-1516.

Missing channels in two-colour microarray experiments: Combining single-channel and two-channel data
Lynch AG;Neal DE;Kelly JD;Burtt GJ;Thorne NP
BMC Bioinformatics 2007; 8 ():26.

Relative impact of nucleotide and copy number variation on gene expression phenotypes
Stranger BE;Forrest MS;Dunning M;Ingle CE;Beazley C;Thorne N;Redon R;Bird CP;de Grassi A;Lee C;Tyler-Smith C;Carter N;Scherer SW;Tavare S;Deloukas P;Hurles ME;Dermitzakis ET
Science 2007; 315 (5813):848-853.

MMASS: an optimized array-based method for assessing CpG island methylation
Ibrahim AEK;Thorne NP;Baird K;Barbosa-Morais NL;Tavare S;Collins VP;Wyllie AH;Arends MJ;Brenton JD
Nucleic Acids Res 2006; 34 (20):e136.

Counting divisions in a human somatic cell tree - How, what and why?
Shibata D;Tavare S
Cell Cycle 2006; 5 (6):610-614.

BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data
Marioni JC;Thorne NP;Tavare S
Bioinformatics 2006; 22 (9):1144-1146.

Human hair genealogies and stem cell latency
Kim JY;Tavare S;Shibata D
BMC Biol 2006; 4 ():2.

Age-related human small intestine methylation: evidence for stem cell niches
Kim JY;Siegmund KD;Tavare S;Shibata D
BMC Med 2005; 3 ():10.

Genome-wide associations of gene expression variation in humans
Stranger BE;Forrest MS;Clark AG;Minichiello MJ;Deutsch S;Lyle R;Hunt S;Kahl B;Antonarakis SE;Tavare S;Deloukas P;Dermitzakis ET
PLoS Genet 2005; 1 (6):695-704.

Counting human somatic cell replications: Methylation mirrors endometrial stem cell divisions
Kim JY;Tavare S;Shibata D
Proc Natl Acad Sci U S A 2005; 102 (49):17739-17744.